| * Shared first authorship |


Under review, revision, or resubmission


Theory, Methodology, & Computation

  • ▬  Stable prediction with radiomics data.
          Peeters, C.F.W., C. Übelhör, S.W. Mes, M. Martens, Koopman, T., de Graaf, P., van Velden, F., Boellaard, R.
          Castelijns, J.A., te Beest, D., Heymans, M.W., & M.A. van de Wiel (under revision).
          arXiv R Package GitHub

Application

  • ▬  Inflammatory bowel disease stratification by means of microbiota analysis of rectal swabs.
          Grasman, M.E., Budding, A.E., Peeters, C.F.W., van der Borden, R.J.W., Eck, A., de Boer, N.K.H. Bouma, G.,
          Savelkoul, P.H., & Bodegraven, A.A. (under revision).

Articles


Theory, Methodology, & Computation

  • ▬  Targeted Fused Ridge Estimation of Inverse Covariance Matrices from Multiple High-Dimensional Data Classes.
          Bilgrau, A.E.*, Peeters, C.F.W.*, Eriksen, P.S., Bøgsted, M., & van Wieringen, W.N.
          Journal of Machine Learning Research, 21(26):1-52 (2020).
          pdf Supplement R Package GitHub
  • ▬  Adaptive group-regularized logistic elastic net regression.
          Münch, M., Peeters, C.F.W., van der Vaart, A.W., & van de Wiel, M.A.
          Biostatistics, [Epub ahead of print] (2020).
          DOI Supplement arXiv R Package GitHub
  • ▬  The spectral condition number plot for regularization parameter evaluation.
          Peeters, C.F.W., van de Wiel, M.A., & van Wieringen, W.N.
          Computational Statistics, 35(2):629-646 (2020).
          DOI Supplement arXiv R Package GitHub
  • ▬  Updating of the Gaussian graphical model through targeted penalized estimation.
          van Wieringen, W.N., Stam, K., Peeters, C.F.W., & M.A. van de Wiel.
          Journal of Multivariate Analysis, 178:104621 (2020).
          pdf Supplement
  • ▬  Voxelwise statistical methods to localize practice variation in brain tumor surgery.
          Eijgelaar, R., de Witt Hamer, P., Peeters, C.F.W., Barkhof, F., van herk, M., & Witte, M.
          PLOS One, 14(9):e0222939 (2019).
          DOI Supplements
  • ▬  Testing for pathway (in)activation using Gaussian graphical models.
          van Wieringen, W.N., Peeters, C.F.W., de Menezes, R.X., & van de Wiel, M.A.
          Journal of the Royal Statistical Society, Series C, 67:1419-1436 (2018).
          DOI Supplement
  • ▬  Bayesian Constrained-Model Selection for Factor Analytic Modeling.
          Peeters, C.F.W.
          The Score, 77: April 2016 Issue (2016).
          DOI arXiv
  • ▬  Ridge Estimation of Inverse Covariance Matrices from High-Dimensional Data.
          van Wieringen, W.N., & Peeters, C.F.W.
          Computational Statistics & Data Analysis, 103:284-303 (2016).
          DOI Supplement arXiv R Package GitHub
  • ▬  Pathophysiological domains underlying the metabolic syndrome: an alternative factor analytic strategy.
          Peeters, C.F.W., Dziura, J., & van Wesel, F.
          Annals of Epidemiology, 24:762-770 (2014).
          DOI Supplement arXiv
  • ▬  Issues in the Design of Online Surveys for Measuring Unethical Work Behavior:
          Recommendations on the Basis of a Split-Ballot Experiment.

          Wouters, K., Maesschalck, J., Peeters, C.F.W., & Roosen, M.
          Journal of Business Ethics, 120:275-289 (2014).
          DOI
  • ▬  Rotational Uniqueness Conditions Under Oblique Factor Correlation Metric.
          Peeters, C.F.W.
          Psychometrika, 77:288-292 (2012).
          DOI arXiv
  • ▬  A Note on a Simple and Practical Randomized Response Framework for Eliciting Sensitive Dichotomous & Quantitative Information.
          Peeters, C.F.W., Lensvelt-Mulders, G.J.L.M., & Lasthuizen, K.
          Sociological Methods & Research, 39:283-296 (2010).
          DOI arXiv

Application

  • ▬  Multiparametric functional MRI and 18F-FDG-PET for survival prediction in patients with head and neck
          squamous cell carcinoma treated with (chemo)radiation.

          Martens, R.M., Koopman, T., Lavini, C., Meedi, A., Peeters, C.F.W., Noij, D.P., Zwezerijnen, G., Marcus, J.T., Vergeer, M.R., Leemans, R.,
          de Bree, R., de Graaf, P., Boellaard, R., & Castelijns, J.A.
          European Radiology, 31:616-628 (2021).
          DOI Supplement
  • ▬  Network Analysis of the Participation and Activity Inventory for Children and Youth (PAI-CY) 7-12 Years with Visual Impairment.
          Elsman, E.B.M., Peeters, C.F.W., van Nispen, R.M.A., & van Rens, G.H.M.B.
          Translational Vision Science & Technology, 9:19 (2020).
          DOI R Package
  • ▬  Annual malignant transformation rate of oral leukoplakia remains consistent: A long-term follow-up study.
          Evren, I., Brouns, E.R., Wils, L.J., Poell, J.B., Peeters, C.F.W., Brakenhoff, R.H., Bloemena, E., & de Visscher, J.G.A.M.
          Oral Oncology, 110:105014 (2020).
          DOI
  • ▬  Predictive value of quantitative 18F-FDG-PET radiomics analysis in patients with head and neck squamous cell carcinoma.
          Martens, R.M., Koopman, T., Noij, D.P., Pfaehler, E., Übelhör, C., Sharma, S., Vergeer, M.R., Leemans, R., Hoekstra, O.S., Yaqub, M.,
          Zwezerijnen, B., Heymans, M.W., Peeters, C.F.W., de Bree, R., de Graaf, P., Castelijns, J.A., & Boellaard, R.
          EJNMMI Research, 10:102 (2020).
          DOI Supplement R Package
  • ▬  Outcome prediction of head and neck squamous cell carcinoma by MRI radiomic signatures.
          Mes, S., van Velden, F., Peltenburg, B., Peeters, C.F.W., te Beest, D., van de Wiel, M.A., Mekke, J.,
          Mulder, D., Martens, R., Castelijns, J., Pameijer, F., de Bree, R., Boellaard, R., Leemans, C.R., Brakenhoff, R., & de Graaf, P.
          European Radiology, 30:6311-6321 (2020).
          DOI Supplement R Package
  • ▬  Who provides care in the last year of life? A description of care networks of community-dwelling older adults in the Netherlands.
          Bijnsdorp, F.M., Pasman, H.R.W., Francke, A.L., Evans, N., Peeters, C.F.W., & Broese van Groenou, M.I.
          BMC Palliative Care, 18:41 (2019).
          DOI
  • ▬  Systemic and intrathecal immune activation in association with cerebral and cognitive outcomes in paediatric HIV.
          Blokhuis, C., Peeters, C.F.W., Cohen, S., Scherpbier, H.J., Kuijpers, T.W., Reiss, P., Kootstra, N.A., Teunissen, C.E., & Pajkrt, D.
          Scientific Reports, 9:8004 (2019).
          DOI
  • ▬  Cross-cultural validation of the Functional Vision Questionnaire for Children and Young People (FVQ_CYP) with
          visual impairment in the Dutch population: Challenges and opportunities.

          Elsman, E., Tadic, V., Peeters, C.F.W., van Rens, G.H.M.B., Rahi, J.S., & van Nispen, R.M.A.
          BMC Medical Research Methodology, 19:221 (2019).
          DOI
  • ▬  Erratum to "Circulating metabolites and general cognitive ability and dementia: Evidence from 11 cohort studies"
          [Alzheimer's & Dementia 2018; 14: 707-22].

          van der Lee, S.J., Teunissen, C.E., Pool, R., Shipley, M.J., Teumer, A., Chouraki, V., Melo van Lent, D., Tynkkynen, J.,
          Fischer, K., Hernesniemi, J., Haller, T., Singh-Manoux, A., Verhoeven, A., Willemsen, G., de Leeuw, F.A., Wagner, H.,
          van Dongen, J., Hertel, J., Budde, K., Willems van Dijk, K., Weinhold, L., Ikram, M.A., Pietzner, M., Perola, M.,
          Wagner, M., Friedrich, N., Slagboom, P.E., Scheltens, P., Yang, Q., Gertzen, R.E., Egert, S., Li, S., Hankemeier, T.,
          van Beijsterveldt, C.E.M., Vasan, R.S., Maier, W., Peeters, C.F.W., Grabe, H.J., Ramirez, A., Seshadri, S., Metspalu, A.,
          Kivimäki, M., Salomaa, V., Demirkan, A., Boomsma, D.I., van der Flier, W., Amin, N., & van Duijn, C.M.
          Alzheimer's & Dementia, 15:319 (2019).
          DOI
  • ▬  Zorgnetwerken: Wie zorgt voor thuiswonende ouderen aan het levenseinde?
          Bijnsdorp, F.M., Broese van Groenou, M.I., Francke, A.L., Pasman, H.R.W., Evans, N., Peeters, C.F.W., & Kruijswijk, W.
          Pallium, 20(4):24-27 (2018).
          DOI
  • ▬  Variability of core microbiota in newly diagnosed treatment-naïve paediatric inflammatory bowel disease patients.
          de Meij, T.G.J.*, de Groot, E.F.J.*, Peeters, C.F.W., de Boer, N.K.H., Kneepkens, F., Eck, A., Benninga, M.A.,
          Savelkoul, P.H.M., van Bodegraven, A.A., & Budding, A.E.
          PLOS One, 13(8):e0197649 (2018).
          DOI bioRXiv
  • ▬  Circulating metabolites and general cognitive ability and dementia: Evidence from 11 cohort studies.
          van der Lee, S.J., Teunissen, C.E., Pool, R., Shipley, M.J., Teumer, A., Chouraki, V., Melo van Lent, D., Tynkkynen, J.,
          Fischer, K., Hernesniemi, J., Haller, T., Singh-Manoux, A., Verhoeven, A., Willemsen, G., de Leeuw, F.A., Wagner, H.,
          van Dongen, J., Hertel, J., Budde, K., Willems van Dijk, K., Weinhold, L., Ikram, M.A., Pietzner, M., Perola, M.,
          Wagner, M., Friedrich, N., Slagboom, P.E., Scheltens, P., Yang, Q., Gertzen, R.E., Egert, S., Li, S., Hankemeier, T.,
          van Beijsterveldt, C.E.M., Vasan, R.S., Maier, W., Peeters, C.F.W., Grabe, H.J., Ramirez, A., Seshadri, S., Metspalu, A.,
          Kivimäki, M., Salomaa, V., Demirkan, A., Boomsma, D.I., van der Flier, W., Amin, N., & van Duijn, C.M.
          Alzheimer's & Dementia, 14:707-722 (2018).
          DOI
  • ▬  Identification and validation of a 3-gene methylation classifier for HPV-based cervical screening on self-samples.
          Verlaat, W., Snoek, B.C., Heideman, D.A.M., Wilting, S.M., Snijders, P.J.F., Novianti, P.W., van Splunter, A.P., Peeters, C.F.W.,
          van Trommel, N.E., Massuger, L.F.A.G., Bekkers, R.L.M., Melchers, W.J.G., van Kemenade, F.J., Berkhof, J., van de Wiel, M.A.,
          Meijer, C.J.L.M., & Steenbergen, R.D.M.
          Clinical Cancer Research, 24:3456-3464 (2018).
          DOI
  • ▬  Blood-based metabolic signatures in Alzheimer's Disease.
          de Leeuw, F.A.*, Peeters, C.F.W.*, Kester, M.I., Harms, A.C., Struys, E.A., Hankemeier, T., van Vlijmen, H.W.T., van der Lee, S.J.,
          van Duijn, C.M., Scheltens, P., Demirkan, A., van de Wiel, M.A., van der Flier, W.M., & Teunissen, C.E.
          Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 8:196-207 (2017).
          DOI Supplement 1 Supplement 2 Supplement 3 arXiv R Package GitHub
  • ▬  Detecting functional decline from normal aging to dementia:
          Development and validation of a short version of the Amsterdam IADL Questionnaire.

          Jutten, R.J., Peeters, C.F.W., Leijdesdorff, S.M.J., Visser, P.J., Maier, A.B., Terwee, C.B., Scheltens, P., & Sikkes, S.A.M.
          Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 8:26-35 (2017).
          DOI arXiv
  • ▬  Sitting too much: A hierarchy of socio-demographic correlates.
          Lakerveld, J., Loyen, A., Schotman, N., Peeters, C.F.W., Cardon, G., van der Ploeg, H.P., Lien, N., Chastin, S., & Brug, J.
          Preventive Medicine, 101:77-83 (2017).
          DOI
  • ▬  De MiniScan als psychiatrische interventie;
          pilotonderzoek naar de toegevoegde waarde van een gecomputeriseerd classificatiesysteem.

          Damhuis, N., van Megen, H.J.G.M., Peeters, C.F.W., & Vollema, M.G.
          Tijdschrift voor Psychiatrie, 53(3):175-180 (2011).
          PDF

Proceedings & Book Chapters


Theory, Methodology, & Computation

  • ▬  Social Network Analysis of Corruption Structures: Adjacency Matrices Supporting the Visualization and Quantification of Layeredness.
          Peeters, C.F.W.
          In: G. de Graaf (Ed.). It is all about integrity, stupid: Studies on, about or inspired by the work of Leo Huberts.
          Den Haag: Boom uitgevers, Chapter 20, pp. 201-219 (2019).
          arXiv GitHub
  • ▬  Application of a New Ridge Estimator of the Inverse Covariance Matrix to the Reconstruction of Gene-Gene Interaction Networks.
          van Wieringen, W.N., & Peeters, C.F.W.
          In: C. Di Serio, P. liò, A. Nonis, & R. Tagliaferri (Eds.). Computational Intelligence Methods for Bioinformatics and Biostatistics.
          Lecture Notes in Computer Science, vol 8623. Springer, pp. 170-179 (2015).
          DOI R Package GitHub
  • ▬  Inequality Constrained Multilevel Models.
          Kato, B.S., & Peeters, C.F.W.      
          In: H. Hoijtink, I. Klugkist, & P.A. Boelen (Eds.). Bayesian Evaluation of Informative Hypotheses.
          New York: Springer, pp. 273-295 (2008).
          DOI arXiv
  • ▬  Measuring Corruption: Exploring the Iceberg.
          Huberts, L.W.J.C., Lasthuizen, K. & Peeters, C.F.W.
          In: C. Sampford, A. Shacklock, C. Connors, & F. Galtung (Eds.). Measuring Corruption.
          Hampshire [etc.]: Ashgate Publishing (Series: Law, Ethics and Governance), pp. 265-293 (2006).
          PDF

Application

  • ▬  Onderzoek naar corruptie en fraude in Nederlandse gemeenten.
          Lasthuizen, K., Peeters, C.F.W., Huberts, L.W.J.C., & Hulsebosch, H.M.C.
          In: L. Cleef, E. Janse, M. Kaptein, A. Koenders, L. Porrio, & C. van Zwam (Eds.). Jaarboek Beveiliging Totaal 2006.
          Alphen aan den Rijn: Kluwer, pp. 199-208 (2006).
          PDF
  • ▬  Nieuw onderzoek naar de omvang van corruptie.
          Huberts, L.W.J.C., Lasthuizen, K.M., Oppenhuis, E., & Peeters, C.F.W.
          In: L.W.J.C. Huberts, & J.M. Nelen (Eds.). Corruptie in het Nederlandse openbaar bestuur. Omvang, aard en afdoening.
          Utrecht: Lemma, pp. 69-94 (2005).
          PDF

Monographs


  • ▬  Bayesian Exploratory and Confirmatory Factor Analysis: Perspectives on Constrained-Model Selection.
          Peeters, C.F.W.
          Utrecht University (Ph.D. thesis, 2012)
          PDF
  • ▬  Measuring politically sensitive behavior.
          Peeters, C.F.W.
          Amsterdam: Dynamics of Governance (ISBN: 9078223014) (2005)
          PDF

Published (extended) Abstracts


Theory, Methodology, & Computation

  • ▬  Gaussian moralized reciprocal graph modeling for genomic data integration.
          Peeters, C.F.W., van Wieringen, W.N., & van de Wiel, M.A.
          In: L. Lusa, & J. Stare (Eds.). International Conference Applied Statistics 2013.
          Ljubljana, Slovenia: Statistical Society of Slovenia, p. 50 (2013).
          PDF

Application

  • ▬  CSF biomarkers for frontotemporal dementia and its pathological subtypes.
          Del Campo, M., Peeters, C.F.W., Chen-Plotkin, A., van der Flier, W., Meeter, L.H.H., van Swieten, J.C., Hu, W.T., Irwin, D.J., Pijnenburg, Y.A.L., & Teunissen, C.E.
          Alzheimer's & Dementia, 16(Suppl. 5):e045851 (2020).
          DOI
  • ▬  Participation from children with visual impairment and their parents' perspectives: a network modelling
          approach of the Participation and Activity Inventory for Children and Youth (PAI-CY) questionnaire.

          van Nispen, R.M.A., Elsman, E.B.M., van Rens, G.H.M.B., & Peeters, C.F.W.
          Investigative Ophthalmology & Visual Science, 61(7):1932 (2020).
          DOI
  • ▬  Novel CSF Protein Biomarkers for Specific and Differential Diagnosis of AD.
          Del Campo, M., Peeters, C.F.W., Pijnenburg, Y.A.L., Lemstra, E., van der Flier, W.M., & Teunissen, C.E.
          Alzheimer's & Dementia, 15(7), Supplement:P918 (2019).
          DOI
  • ▬  Challenges in the cross-cultural validation of the Functional Vision Questionnaire for
          Children and Young people (FVQ_CYP) with visual impairment.

          Elsman, E., Tadic, V., Peeters, C.F.W., van Rens, G., Rahi, J., & van Nispen, R.
          Quality of Life Research, 27 (Suppl 1):S65-S66 (2018).
          DOI
  • ▬  Metabolic blood-based biomarkers relate to brain atrophy and white matter hyperintensities in Alzheimer's disease.
          de Leeuw, F.A., Tijms, B.M., Peeters, C.F.W., Kester, M.I., Scheltens, P., van Duijn, C.M., Barkhof, F., Teunissen, C.E., & van der Flier, W.M.
          Alzheimer's & Dementia, 14(7), Supplement:P401-P403 (2018).
          DOI
  • ▬  Profiling peripheral metabolic dysregulation in Alzheimer's Disease: The added value of multiple signatures.
          de Leeuw, F.A., Peeters, C.F.W., Kester, M.I., Harms, A.C., Hankemeier, T., Struys, E.A., Demirkan, A., Scheltens, P.,
          van Vlijmen, H.W.T., van de Wiel, M.A., van Duijn, C.M., van der Flier, W.M., & Teunissen, C.E.
          Alzheimer's & Dementia, 13(7), Supplement:P1024-P1025 (2017).
          DOI
  • ▬  Evaluation of a new intake questionnaire for visually impaired young adults:
          the Participation and Activity Inventory for Young Adults (PAI-YA).

          Elsman, E.B.M., van Rens, G.H.M.B., Peeters, C.F.W., & van Nispen, R.M.A.
          Acta Ophthalmologica, 95 (Suppl. 258):7 (2017).
          DOI
  • ▬  Microbiota-Based IBD Diagnostics proved robust for inter-clinic variation.
          Eck, A., de Groot, E.F., de Meij, T., Welling, M., Peeters, C.F.W., Savelkoul, P., & Budding, A.E.
          Gastroenterology, 150(4), Supplement:S548-S549 (2016).
          DOI
  • ▬  When less is more: Detecting Functional Decline Using a Short Version of the Amsterdam IADL Questionnaire.
          Jutten, R.J., Peeters, C.F.W., Terwee, C.B., Maier, A.B., Binnekade, T.T., Visser, P.J., Leijdesdorff, S.M.J., Scheltens, P., & Sikkes, S.A.M.
          Alzheimer's & Dementia, 12(7), Supplement:P498-P499 (2016).
          DOI
  • ▬  Is there a difference in health-related quality of life in caregivers
          based on the living situation of the person with dementia over one year?

          MacNeil-Vroomen, J., Hoeben, J., Peeters, C.F.W., Bosmans, J., De Rooij, S., Allore, H.G., Monin, J., & van Hout, H.P.J.
          Alzheimer's & Dementia, 12(7), Supplement:P604 (2016).
          DOI

Reports


  • ▬  Evaluating the scientific veracity of publications by dr. Jens Förster.
          Peeters, C.F.W., Klaassen, C.A.J., & van de Wiel, M.A.
          Report commissioned by the University of Amsterdam. (2015)
          PDF
  • ▬  Quality Control, Preprocessing, and Integrative Analyzes of EpiRaBio Thyroid Cancer Data.
          Peeters, C.F.W., van Wieringen, W.N., & van de Wiel, M.A.
          Report Task 1.3.5 EpiRadBio (2014).
  • ▬  Nederland fraude- en corruptieland?
          Huberts, L.W.J.C., Hulschebosch, H., Lasthuizen, K. & Peeters, C.F.W.
          Integrity of Governance report (2004).
          PDF

Public Letters and Commentaries


  • ▬  Response to draft of Expression of Concern regarding Förster & Denzler (2012, JESP, 48).
          Peeters, C.F.W., Chris A.J. Klaassen, & Mark A. van de Wiel (28/02/2017).
          Link
  • ▬  Response to second inquiry regarding Förster & Denzler (2012, JESP, 48).
          Peeters, C.F.W., Chris A.J. Klaassen, & Mark A. van de Wiel (11/01/2017).
          Link
  • ▬  Response to the request for corrections by Liberman and Denzler.
          Peeters, C.F.W., Chris A.J. Klaassen, & Mark A. van de Wiel (14/11/2016).
          Link
  • ▬  Metaresponse to public discussions of the investigation into publications by dr. Förster
          Peeters, C.F.W., Chris A.J. Klaassen, & Mark A. van de Wiel (02/07/2015).
          Link
  • ▬  Response to public comments by dr. Liberman
          Peeters, C.F.W., Chris A.J. Klaassen, & Mark A. van de Wiel (02/07/2015).
          Link
  • ▬  Response to the letter by Liberman and Denzler, and the statement by Jens Förster.
          Peeters, C.F.W., Chris A.J. Klaassen, & Mark A. van de Wiel (15/05/2015).
          Link